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Context Engineering for AI Agents: Why It Matters and How to Do It Right

  • Writer: Jayant Upadhyaya
    Jayant Upadhyaya
  • Jan 17
  • 6 min read
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Artificial intelligence agents have become one of the most talked-about developments in recent years. Research demonstrations show impressive capabilities, and expectations around AI-driven products continue to rise. However, when these systems are deployed into real-world applications, many fail to perform reliably. Even large technology companies struggle to turn promising AI agent demos into stable, usable products.


This gap between research success and production failure is not primarily caused by weak models or missing tools. In most cases, the core issue is context engineering. Building AI agents that behave correctly at scale depends less on the model itself and more on how information is selected, structured, and maintained during inference.


This article explains what context engineering is, why it is difficult, and how engineers can approach it more effectively when building AI systems for real users.


Why AI Agents Fail in Practice


AI agents often look impressive in controlled demonstrations. They respond correctly to prompts, use tools, and reason through problems. However, once deployed into production environments, problems begin to appear:

  • Responses become inconsistent over time

  • Instructions are ignored after long conversations

  • The system behaves unpredictably

  • Performance degrades as interactions increase


These issues are rarely caused by a lack of intelligence in the model. Instead, they are usually caused by poorly engineered context. Context is the information provided to a large language model during inference. If that information is incomplete, excessive, contradictory, outdated, or poorly structured, the model will struggle regardless of its capabilities.


What Is Context Engineering?



Context engineering refers to the strategies used tocurate and maintain the optimal set of information that a large language model processes during inference.


This includes:

  • System instructions

  • User messages

  • Retrieved documents

  • Tool descriptions

  • Tool outputs

  • Memory and conversation history

  • Domain knowledge

  • Environmental feedback


All of this information enters the model’s context window. Context engineering is the practice of deciding what information to include, what to exclude, and when to update it.


Earlier work in AI focused heavily on prompt engineering, which involved crafting good instructions for models. While prompt engineering remains important, it represents only a small part of what is needed to build reliable AI agents.


Prompt Engineering vs Context Engineering


Prompt engineering typically follows a simple structure:

  1. A system prompt defines the model’s role

  2. A user message provides input

  3. The model generates a response


This works well for simple tasks. However, AI agents are more complex. They may:

  • Use multiple tools

  • Retrieve documents

  • Store and recall memory

  • Perform multi-step reasoning

  • Iterate through loops before producing output


In these systems, the model is no longer responding to a single prompt. Instead, it is reasoning over a growing body of context that changes dynamically. Context engineering expands beyond prompt writing to include:

  • Managing tool interactions

  • Controlling memory growth

  • Curating retrieved information

  • Structuring instructions across states

  • Preventing context overload


Context as a Finite Resource

Although modern models support large context windows, more context does not automatically mean better performance. Research consistently shows that as context grows:

  • Model accuracy declines

  • Important details are overlooked

  • Instructions are ignored

  • Outputs become less reliable


This mirrors human cognition. Humans also struggle when given too much information at once. Working memory has limits, and attention degrades when overwhelmed. Context should be treated as a finite resource with diminishing returns. The goal is not to provide more information, but to provide the smallest set of high-signal information that maximizes the likelihood of achieving the desired outcome.


The Goal of Context Engineering


At its core, context engineering asks one question:

What does the model need to know right now to succeed at this task?

Everything else should be removed, summarized, or deferred.


This is difficult because:

  • User interactions evolve over time

  • Business logic becomes complex

  • Feedback accumulates

  • Edge cases multiply

Without discipline, context grows uncontrollably.


System Prompts: Finding the Right Balance

System prompts define the behavior and role of an AI agent. Many engineers struggle to calibrate them correctly.


A common pattern occurs:

  1. Start with a vague system prompt

  2. Deploy the system

  3. Collect user complaints

  4. Add rules to fix each issue

  5. Repeat until the prompt becomes overly specific


Eventually, the system prompt turns into a long list of instructions, exceptions, and negative constraints. This approach does not scale.


Overly restrictive prompts:

  • Inflate context size

  • Reduce model flexibility

  • Increase instruction conflicts

  • Lead to rule neglect in long sessions


The goal is to be specific enough to guide behavior, but not so specific that the model is forced into rigid decision trees.


Avoiding Negative Instructions


One of the most common mistakes in prompt design is relying heavily on negative instructions such as:

  • “Do not do X”

  • “Never say Y”

  • “Avoid Z”


Large language models perform better when given positive examples rather than negative constraints. Instead of telling the model what not to do, show it what correct behavior looks like. Few-shot examples with desired outputs are far more effective than long lists of prohibitions.


Splitting Large Prompts into Smaller Problems

When system prompts become too large, the solution is not to compress them further. Instead, the problem should be split.


Effective strategies include:

  • Using routing logic to select smaller prompts

  • Creating multiple specialized prompts

  • Dividing tasks into stages

  • Delegating subtasks to separate calls

Reducing problem scope reduces context size and improves reliability.


Structuring Prompts Clearly

Modern best practices recommend structuring prompts with clear sections, often using:

  • Markdown

  • XML-style tags


Typical sections include:

  • Background information

  • Instructions

  • Tool usage guidance

  • Output format

Clear structure improves model comprehension and reduces ambiguity.


Context Failures Are Often Invisible During Development


Many AI systems work well in early testing because:

  • Interactions are short

  • Context remains small

  • Edge cases are limited


Problems emerge only after extended use. Users report that:

  • The system forgets earlier instructions

  • Behavior changes unexpectedly

  • Responses degrade after many turns


These failures are caused by context accumulation, not model weakness.


The Importance of Tracing and Observability

Understanding context behavior requires visibility into:

  • System prompts

  • User messages

  • Tool calls

  • Retrieved documents

  • Full conversation history


Tracing tools make it possible to inspect entire interaction trees. When errors occur, examining the full context often reveals the root cause immediately.

Without tracing, engineers are guessing.


Reasoning Failures Are Usually Context Failures


When an AI agent behaves incorrectly, the issue is rarely that the model cannot reason. In most cases, the model is reasoning correctly over bad context.


Common context problems include:

  • Contradictory instructions

  • Outdated information

  • Excessive noise

  • Missing critical details

Improving context quality often resolves issues without changing models.


Transitioning from Software Engineering to AI Engineering


Many developers entering AI engineering come from traditional software backgrounds. This transition introduces challenges because AI systems are non-deterministic.


Traditional development relies on:

  • Fixed logic

  • Unit tests

  • Predictable outputs


AI systems require:

  • Statistical reasoning

  • Behavioral testing

  • Long-session evaluation


Passing a single test is not enough. AI systems must behave correctly across many interactions.


Simple Workflows vs True Agents



Not every problem requires an AI agent.


A simple workflow using:

  • Prompt chaining

  • Routing logic

  • Deterministic steps

is often more reliable than an agent that autonomously selects tools and paths.


True agents are systems where models:

  • Decide which tools to use

  • Operate in loops

  • Adapt dynamically

These systems are powerful but harder to control.


When to Use Agents

Agents work best when:

  • Users are in the loop

  • Corrections are possible

  • Exploration is acceptable


Examples include:

  • Chat interfaces

  • Developer tools

  • Creative assistants


Agents perform poorly when:

  • One-shot accuracy is required

  • No human supervision exists

  • Errors are costly


Backend automation and customer-facing workflows usually require tighter control.


Managing Retrieved Documents

Large documents should not be inserted into context directly. Retrieval strategies help manage scale.

Best practices include:

  • Chunking documents

  • Retrieving a broad set

  • Using re-ranking

  • Passing only top results

This reduces noise while preserving relevance.


Tool Descriptions and Context Size

Tools also consume context. Overloading an agent with tools causes confusion.

Effective tool design requires:

  • Short descriptions

  • Clear purposes

  • No overlap

  • Minimal parameters

Complex systems can break tools into sub-agents or workflows.


Memory Management and Conversation History

Conversation history grows quickly and often causes failures.

Strategies for managing memory include:

  • Pruning older messages

  • Summarizing early conversation segments

  • Storing state externally

  • Injecting context selectively

Long conversations should not be passed verbatim.


State-Based Context Engineering

Context does not need to be linear.

Using state machines allows systems to:

  • Track user progress

  • Change instructions dynamically

  • Reduce unnecessary history

State-based design improves clarity and scalability.


Context Engineering Is Creative and Iterative


There is no single correct solution. Context engineering involves experimentation, observation, and refinement.


What works depends on:

  • Use case

  • User behavior

  • System constraints

Best practices provide guidance, not guarantees.


Conclusion

Context engineering is one of the most important and challenging aspects of building AI agents. Most failures in production systems are not caused by weak models or missing tools, but by poorly curated context.


Successful AI systems:

  • Treat context as a limited resource

  • Prioritize high-signal information

  • Adapt context dynamically

  • Use structure and state intentionally


Building reliable AI agents requires shifting focus from models to context. When context is engineered carefully, even simple models can perform exceptionally well. When context is neglected, even the best models will fail.

Context engineering is not optional. It is the foundation of scalable, trustworthy AI systems.

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